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1

From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data

Rainer Opgen-Rhein, Korbinian Strimmer

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 443 KB

english, 2007

2

APE: Analyses of Phylogenetics and Evolution in R language

Paradis, E., Claude, J., Strimmer, K.

Journal:

Year:

2004

Language:

english

File:

PDF, 36 KB

english, 2004

3

High-Dimensional Regression and Variable Selection Using CAR Scores

Zuber, Verena, Strimmer, Korbinian

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 345 KB

english, 2011

4

An empirical Bayes approach to inferring large-scale gene association networks

Schafer, J., Strimmer, K.

Journal:

Year:

2005

Language:

english

File:

PDF, 512 KB

english, 2005

5

Book Review: Statistical Methods in Bioinformatics: An Introduction. By Warren J. Ewens and Gregory R. Grant

Korbinian Strimmer

Journal:

Biometrical Journal

Year:

2006

Language:

english

File:

PDF, 39 KB

english, 2006

6

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

Anne-Laure Boulesteix, Korbinian Strimmer

Journal:

Theoretical Biology and Medical Modelling

Year:

2005

Language:

english

File:

PDF, 297 KB

english, 2005

7

Comments on: Augmenting the bootstrap to analyze high dimensional genomic data

Korbinian Strimmer

Journal:

Year:

2008

Language:

english

File:

PDF, 182 KB

english, 2008

8

A general modular framework for gene set enrichment analysis

Marit Ackermann, Korbinian Strimmer

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 970 KB

english, 2009

9

Modeling gene expression measurement error: a quasi-likelihood approach

Korbinian Strimmer

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 815 KB

english, 2003

10

Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process

Rainer Opgen-Rhein, Korbinian Strimmer

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 441 KB

english, 2007

11

A unified approach to false discovery rate estimation

Korbinian Strimmer

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 438 KB

english, 2008

12

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

Gangolf Jobb, Arndt von Haeseler, Korbinian Strimmer

Journal:

BMC Evolutionary Biology

Year:

2004

Language:

english

File:

PDF, 339 KB

english, 2004

13

Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo

Rainer Opgen-Rhein, Ludwig Fahrmeir, Korbinian Strimmer

Journal:

BMC Evolutionary Biology

Year:

2005

Language:

english

File:

PDF, 378 KB

english, 2005

14

Signal identification for rare and weak features: higher criticism or false discovery rates?

Klaus, B., Strimmer, K.

Journal:

Year:

2013

Language:

english

File:

PDF, 327 KB

english, 2013

15

A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics

Schäfer, Juliane, Strimmer, Korbinian

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.42 MB

english, 2005

16

A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies

Verena Zuber, A Pedro Duarte Silva, Korbinian Strimmer

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 238 KB

english, 2012

17

A novel exploratory method for visual recombination detection

Korbinian Strimmer, Kristoffer Forslund, Barbara Holland, Vincent Moulton

Journal:

Year:

2003

Language:

english

File:

PDF, 366 KB

english, 2003

18

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

Schmidt, H. A., Strimmer, K., Vingron, M., von Haeseler, A.

Journal:

Year:

2002

Language:

english

File:

PDF, 90 KB

english, 2002

19

Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment

Korbinian Strimmer and Arndt Von Haeseler

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 767 KB

english, 1997

20

Inferring Confidence Sets of Possibly Misspecified Gene Trees

Korbinian Strimmer and Andrew Rambaut

Journal:

Proceedings Biological Sciences

Year:

2002

Language:

english

File:

PDF, 890 KB

english, 2002

21

Inferring confidence sets of possibly misspecified gene trees

Strimmer, K., Rambaut, A.

Journal:

Proceedings Biological Sciences

Year:

2002

Language:

english

File:

PDF, 150 KB

english, 2002

22

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

Boulesteix, A.-L., Strimmer, K.

Journal:

Briefings in Bioinformatics

Year:

2006

Language:

english

File:

PDF, 165 KB

english, 2006

23

Identifying periodically expressed transcripts in microarray time series data

Wichert, S., Fokianos, K., Strimmer, K.

Journal:

Year:

2004

Language:

english

File:

PDF, 293 KB

english, 2004

24

Discussion on the Meeting on 'Statistical Modelling and Analysis of Genetic Data'

David J. Balding, Andrew D. Carothers, Jonathan L. Marchini, Lon R. Cardon, Atam Vetta, Bob Griffiths, B. S. Weir, W. G. Hill, Darlene Goldstein, Korbinian Strimmer, Simon Myers, Mark A. Beaumont, C.

Journal:

Journal of the Royal Statistical Society: Series B (Statistical Methodology)

Year:

2002

Language:

english

File:

PDF, 6.15 MB

english, 2002

25

Accurate Ranking of Differentially Expressed Genes by a Distribution-Free Shrinkage Approach

Opgen-Rhein, Rainer, Strimmer, Korbinian

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 5.69 MB

english, 2007

26

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

Journal:

Year:

2008

Language:

english

File:

PDF, 94 KB

english, 2008

27

Over-optimism in bioinformatics: an illustration

Jelizarow, M., Guillemot, V., Tenenhaus, A., Strimmer, K., Boulesteix, A.-L.

Journal:

Year:

2010

Language:

english

File:

PDF, 260 KB

english, 2010

28

A simple data-adaptive probabilistic variant calling model

Hoffmann, Steve, Stadler, Peter F, Strimmer, Korbinian

Journal:

Algorithms for Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

29

MALDIquant: a versatile R package for the analysis of mass spectrometry data

Gibb, S., Strimmer, K.

Journal:

Year:

2012

Language:

english

File:

PDF, 492 KB

english, 2012

30

Differential protein expression and peak selection in mass spectrometry data by binary discriminant analysis

Gibb, S., Strimmer, K.

Journal:

Year:

2015

Language:

english

File:

PDF, 178 KB

english, 2015

31

Therapeutic vaccination reduces HIV sequence variability

Hoffmann, D., Seebach, J., Cosma, A., Goebel, F. D., Strimmer, K., Schatzl, H. M., Erfle, V.

Journal:

The FASEB Journal

Year:

2007

Language:

english

File:

PDF, 185 KB

english, 2007

32

PAL: an object-oriented programming library for molecular evolution and phylogenetics

Drummond, A., Strimmer, K.

Journal:

Year:

2001

Language:

english

File:

PDF, 67 KB

english, 2001

33

Identifying periodically expressed transcripts in microarray time series data

Wichert, S., Fokianos, K., Strimmer, K.

Journal:

Year:

2008

Language:

english

File:

PDF, 43 KB

english, 2008

34

A CART-based approach to discover emerging patterns in microarray data

Boulesteix, A.-L., Tutz, G., Strimmer, K.

Journal:

Year:

2003

Language:

english

File:

PDF, 153 KB

english, 2003

35

FEATURE SELECTION IN OMICS PREDICTION PROBLEMS USING CAT SCORES AND FALSE NONDISCOVERY RATE CONTROL

Miika Ahdesmäki and Korbinian Strimmer

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 1.28 MB

english, 2010

36

Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models

Strimmer, K., Moulton, V.

Journal:

Molecular Biology and Evolution

Year:

2000

Language:

english

File:

PDF, 126 KB

english, 2000

37

Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies

Strimmer, K., von Haeseler, A.

Journal:

Molecular Biology and Evolution

Year:

1996

Language:

english

File:

PDF, 124 KB

english, 1996

38

Accuracy of Neighbor Joining for n-Taxon Trees

Strimmer, K., von Haeseler, A.

Journal:

Systematic Biology

Year:

1996

Language:

english

File:

PDF, 816 KB

english, 1996

39

Retraction Note: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

Jobb, Gangolf, von Haeseler, Arndt, Strimmer, Korbinian

Journal:

BMC Evolutionary Biology

Year:

2015

Language:

english

File:

PDF, 303 KB

english, 2015

40

Recombination Analysis Using Directed Graphical Models

Strimmer, K., Wiuf, C., Moulton, V.

Journal:

Molecular Biology and Evolution

Year:

2001

Language:

english

File:

PDF, 58 KB

english, 2001

41

Exploring the Demographic History of DNA Sequences Using the Generalized Skyline Plot

Strimmer, K., Pybus, O. G.

Journal:

Molecular Biology and Evolution

Year:

2001

Language:

english

File:

PDF, 116 KB

english, 2001

42

Bayesian Probabilities and Quartet Puzzling

Strimmer, K., Goldman, N., von Haeseler, A.

Journal:

Molecular Biology and Evolution

Year:

1997

Language:

english

File:

PDF, 345 KB

english, 1997

43

Accuracy of Neighbor Joining for n-Taxon Trees

Korbinian Strimmer and Arndt von Haeseler

Journal:

Systematic Biology

Year:

1996

Language:

english

File:

PDF, 1.00 MB

english, 1996

44

Feature selection in omics prediction problems using cat scores and false nondiscovery rate control

Ahdesmäki, Miika, Strimmer, Korbinian

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 219 KB

english, 2010

45

Optimal Whitening and Decorrelation

Kessy, Agnan, Lewin, Alex, Strimmer, Korbinian

Journal:

The American Statistician

Year:

2017

Language:

english

File:

PDF, 114 KB

english, 2017

46

Lernen mit „Eventcharakter“

Ulrike Schleich,Klaus Strimmer

Journal:

Year:

2016

Language:

german

File:

PDF, 331 KB

german, 2016

47

Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment

Strimmer, K., von Haeseler, A.

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 270 KB

english, 1997